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bootscan analysis  (Simplot Science)
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Simplot Science bootscan analysis
Genomic recombination analysis of HCoV-OC43 and HCoV-HKU1. ( A ) <t>Bootscan</t> analysis of HCoV-OC43 genomes comparing recombination patterns between genotype K, lineage 1, and lineage 2. Reference genomes from genotypes A–J were used as putative parental strains. ( B ) Bootscan analysis of HCoV-HKU1 complete genome was performed using reference genomes for genotypes A, B and C as putative parental genotype. Co-infection status (CO: co-infected; N: non-coinfected).
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Genomic recombination analysis of HCoV-OC43 and HCoV-HKU1. ( A ) Bootscan analysis of HCoV-OC43 genomes comparing recombination patterns between genotype K, lineage 1, and lineage 2. Reference genomes from genotypes A–J were used as putative parental strains. ( B ) Bootscan analysis of HCoV-HKU1 complete genome was performed using reference genomes for genotypes A, B and C as putative parental genotype. Co-infection status (CO: co-infected; N: non-coinfected).

Journal: Viruses

Article Title: Neutral Impact of SARS-CoV-2 Coinfection on the Recombination-Driven Evolution of Endemic HCoV-OC43

doi: 10.3390/v17091263

Figure Lengend Snippet: Genomic recombination analysis of HCoV-OC43 and HCoV-HKU1. ( A ) Bootscan analysis of HCoV-OC43 genomes comparing recombination patterns between genotype K, lineage 1, and lineage 2. Reference genomes from genotypes A–J were used as putative parental strains. ( B ) Bootscan analysis of HCoV-HKU1 complete genome was performed using reference genomes for genotypes A, B and C as putative parental genotype. Co-infection status (CO: co-infected; N: non-coinfected).

Article Snippet: Recombination was assessed via Bootscan analysis (SimPlot).

Techniques: Infection